STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca0161374-hydroxy-tetrahydrodipicolinate synthase, chloroplastic. (450 aa)    
Predicted Functional Partners:
DAPB2-2
Putative 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic.
     
 0.944
MA16_Dca025220
Aspartate-semialdehyde dehydrogenase.
     
 0.942
AKHSDH2
Homoserine dehydrogenase.
   
 
 0.929
AKHSDH1
Aspartokinase; Belongs to the aspartokinase family.
   
 
 0.925
DHDPS2
4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic.
  
  
 
0.902
MA16_Dca009204
(+)-pulegone reductase.
  
 0.503
DAPB1
Putative 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic.
     
 0.467
HMT-4
Homocysteine S-methyltransferase 4.
    
 0.419
HMT-2
Homocysteine S-methyltransferase 2.
    
 0.419
LYSA1
Diaminopimelate decarboxylase 1, chloroplastic; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.418
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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