STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca011241Uncharacterized protein. (337 aa)    
Predicted Functional Partners:
MA16_Dca007948
SANT domain-containing protein.
   
 0.897
RAP74
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.880
MA16_Dca014514
Transcription initiation factor TFIIF subunit beta.
   
 0.874
RPB36A-2
DNA-directed RNA polymerase II subunit RPB3-A.
   
 0.836
MA16_Dca004831
RuvB-like helicase; Belongs to the RuvB family.
    
 0.826
RPB13.6
DNA-directed RNA polymerase II subunit RPB11.
   
 0.823
MA16_Dca001410
YL1_C domain-containing protein.
    
 0.801
MA16_Dca001753
RuvB-like helicase; Belongs to the RuvB family.
    
 0.794
INO80-2
DNA helicase INO80.
    
 0.793
MA16_Dca020183
MRG domain-containing protein.
    
 0.788
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.