STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNF4-2Sucrose nonfermenting 4-like protein. (533 aa)    
Predicted Functional Partners:
MA16_Dca024933
Beclin-1-like protein.
    
  0.506
MA16_Dca017845
Phosphatidylinositol 3-kinase, root isoform; Belongs to the PI3/PI4-kinase family.
    
  0.506
DAW1-15
Dynein assembly factor with WDR repeat domains 1.
     
 0.498
CBSX1
CBS domain-containing protein CBSX1, chloroplastic.
   
 0.490
MA16_Dca014135
Uncharacterized protein.
   
 0.490
SNF4
Sucrose nonfermenting 4-like protein.
   
0.490
CBSCBS2
SNF1-related protein kinase regulatory subunit gamma-1-like.
   
 0.490
CBSCBS2-2
SNF1-related protein kinase regulatory subunit gamma-1-like.
   
 0.490
KING1
SNF1-related protein kinase regulatory subunit gamma-1.
   
 0.490
MA16_Dca011580
CBS domain-containing protein.
   
 0.490
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.