STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL5-2Thermospermine synthase ACAULIS5. (335 aa)    
Predicted Functional Partners:
SAMDC
S-adenosylmethionine decarboxylase proenzyme.
    
 0.795
SAMDC-2
S-adenosylmethionine decarboxylase proenzyme.
    
 0.795
MA16_Dca008716
Arginase; Belongs to the arginase family.
  
 
 0.788
SPMS
Spermine synthase.
      
 0.730
LYSA1
Diaminopimelate decarboxylase 1, chloroplastic; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 0.726
SAMDC3
S-adenosylmethionine decarboxylase proenzyme.
  
 
 0.669
PAO3
Polyamine oxidase 3.
      
 0.658
SPE2
Arginine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
 0.613
MA16_Dca003466
Arginine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
 0.613
MA16_Dca018327
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
   
 
 0.608
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.