STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FTSH5-2ATP-dependent zinc metalloprotease FTSH 5, mitochondrial; Belongs to the AAA ATPase family. (459 aa)    
Predicted Functional Partners:
rps16
30S ribosomal protein S16, chloroplastic.
  
 
 0.536
RPT5A
26S protease regulatory subunit 6A like A.
  
   0.527
RPT4B
26S protease regulatory subunit S10B like B.
  
   0.521
CDC48C-4
Cell division control protein 48 like C.
  
   
 0.497
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.489
TBP1-2
26S protease regulatory subunit 6A like.
  
   0.489
AAA1-10
Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family.
 
  
 0.484
MA16_Dca007598
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
 0.484
PSRP5
50S ribosomal protein 5, chloroplastic.
    
   0.477
AAA1-13
Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family.
  
   
 0.477
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.