STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca017586Uncharacterized protein. (79 aa)    
Predicted Functional Partners:
MA16_Dca015779
Uncharacterized protein.
   
  
 0.741
TIM9
Mitochondrial import inner membrane translocase subunit Tim9.
   
  
 0.659
MA16_Dca009699
Uncharacterized protein.
   
 
 0.568
MA16_Dca012794
Uncharacterized protein.
   
  
 0.556
ERV1
Sulfhydryl oxidase.
   
  
 0.556
HCC2
Protein SCO1 like 2, mitochondrial.
   
  
 0.544
TIM13
Mitochondrial import inner membrane translocase subunit Tim13; Belongs to the small Tim family.
   
  
 0.529
rpl20
50S ribosomal protein L20, chloroplastic.
   
  
 0.520
rpl20-2
50S ribosomal protein L20, chloroplastic.
   
  
 0.520
MA16_Dca012205
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial.
      
 0.518
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.