STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEMCPorphobilinogen deaminase, chloroplastic. (369 aa)    
Predicted Functional Partners:
HEMB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 0.998
cobA
Uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.996
HEMA1
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
  
 0.990
UROS
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
 
 0.966
MA16_Dca001445
TPR_REGION domain-containing protein.
  
 0.954
MA16_Dca009417
TPR_REGION domain-containing protein.
  
 0.954
MA16_Dca021888
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 0.887
MA16_Dca020854
Uroporphyrinogen decarboxylase 2, chloroplastic.
 
 0.863
MA16_Dca004832
Uroporphyrinogen decarboxylase 2, chloroplastic.
 
 0.862
CHLG
Chlorophyll synthase, chloroplastic.
  
  
 0.807
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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