STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca001552UBX domain-containing protein. (175 aa)    
Predicted Functional Partners:
MA16_Dca011230
Uncharacterized protein.
    
 
 0.723
MA16_Dca002495
Uncharacterized protein.
    
 
 0.723
PUB1
Putative ubiquitin conjugation factor E4.
   
 
 0.720
MA16_Dca014248
NPL4-like protein 2.
    
 
 0.717
MA16_Dca027056
NPL4-like protein.
    
 
 0.717
MA16_Dca014968
UBA domain-containing protein.
    
 
 0.705
MA16_Dca025219
Uncharacterized protein.
    
 
 0.705
MA16_Dca020519
UBA and UBX domain-containing protein.
    
 
 0.700
MA16_Dca024352
PRKCSH domain-containing protein.
    
 
 0.683
MA16_Dca003136
PRKCSH domain-containing protein.
    
 
 0.683
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.