STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca025283Uncharacterized protein. (494 aa)    
Predicted Functional Partners:
MA16_Dca003007
Uncharacterized protein.
   
 0.994
MA16_Dca004666
Sas10 domain-containing protein.
   
 0.992
PUB72-2
U-box domain-containing protein 72.
   
 0.992
MA16_Dca025632
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.992
MA16_Dca005167
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.989
MA16_Dca005221
U3 small nucleolar RNA-associated protein 18 like.
   
 0.989
rps1-2
30S ribosomal protein S1, chloroplastic.
   
 0.989
RACK1B-3
Guanine nucleotide-binding protein subunit beta-like protein B.
   
 0.988
MA16_Dca011861
PINc domain-containing protein.
   
 0.986
MA16_Dca022540
Uncharacterized protein.
   
 0.985
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.