STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca016873Polypyrimidine tract-binding protein like 3. (118 aa)    
Predicted Functional Partners:
MA16_Dca016872
Polypyrimidine tract-binding protein like 3.
 
     0.892
MA16_Dca003820
Uncharacterized protein.
   
 0.541
CBP20
Nuclear cap-binding protein subunit 2.
    
 0.534
MA16_Dca019153
Zinc finger CCCH domain-containing protein 25.
   
 
 0.515
MA16_Dca014514
Transcription initiation factor TFIIF subunit beta.
   
 
  0.477
MA16_Dca014065
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 
  0.431
MA16_Dca016669
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 
  0.431
SF2
Pre-mRNA-splicing factor SF2.
   
 0.424
SF2-2
Pre-mRNA-splicing factor SF2.
   
 0.424
ABH1
Nuclear cap-binding protein subunit 1.
    
  0.412
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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