STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GGRHeterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; Belongs to the FPP/GGPP synthase family. (366 aa)    
Predicted Functional Partners:
GGPS
Geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family.
  
 
 
0.963
GGPPS1
Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic; Belongs to the FPP/GGPP synthase family.
  
 
 
0.963
MA16_Dca021151
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
  
 
 0.958
MA16_Dca023793
Alkyl transferase; Belongs to the UPP synthase family.
 
 
 0.957
MA16_Dca022435
Dehydrodolichyl diphosphate synthase 2.
 
 
 0.956
IPI1
Isopentenyl-diphosphate Delta-isomerase I.
  
 
 0.951
IPI1-2
Isopentenyl-diphosphate Delta-isomerase I.
  
 
 0.951
CHLP-2
Geranylgeranyl diphosphate reductase, chloroplastic.
  
 0.949
MA16_Dca006495
Ditrans,polycis-polyprenyl diphosphate synthase.
  
 
 0.946
FDS-1
Farnesyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
    
 0.935
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.