STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZSS1-7Alpha-humulene synthase. (506 aa)    
Predicted Functional Partners:
SQS1
Squalene synthase.
     
 0.903
FDS-1
Farnesyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
   
 
 0.699
GGPS
Geranylgeranyl pyrophosphate synthase, chloroplastic; Belongs to the FPP/GGPP synthase family.
   
 
 0.630
GGPPS1
Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic; Belongs to the FPP/GGPP synthase family.
   
 
 0.630
GGR
Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; Belongs to the FPP/GGPP synthase family.
   
 
 0.630
MA16_Dca022435
Dehydrodolichyl diphosphate synthase 2.
     
 0.608
MA16_Dca023793
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.602
FTA-2
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
  0.600
FTB
Protein farnesyltransferase subunit beta.
     
  0.600
MA16_Dca006495
Ditrans,polycis-polyprenyl diphosphate synthase.
     
  0.600
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.