STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca00045921 kDa protein. (1005 aa)    
Predicted Functional Partners:
rps16
30S ribosomal protein S16, chloroplastic.
   
   0.550
RPL5-3
60S ribosomal protein L5.
    
   0.545
MA16_Dca025788
Uncharacterized protein.
    
   0.545
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.545
RPS9C
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
    
   0.533
RPS9C-2
40S ribosomal protein S9-2.
    
   0.533
RPS9C-3
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
    
   0.533
RPL28
50S ribosomal protein L28, chloroplastic.
   
 
 0.527
MA16_Dca014565
Uncharacterized protein.
   
 
 0.527
rpl20
50S ribosomal protein L20, chloroplastic.
   
   0.517
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.