STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca000664SWIM-type domain-containing protein. (139 aa)    
Predicted Functional Partners:
MA16_Dca012579
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.563
MA16_Dca005274
Small nuclear ribonucleoprotein Sm D2.
    
 0.544
MUS81
Crossover junction endonuclease MUS81.
    
 0.543
NAD7
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2.
   
   0.493
MA16_Dca026639
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7.
   
   0.490
MA16_Dca001667
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A.
   
 
 0.490
MA16_Dca024890
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
   0.479
MA16_Dca006133
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6.
   
   0.479
MA16_Dca009492
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.478
MA16_Dca013231
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B.
    
   0.477
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.