STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVP2-6Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2. (565 aa)    
Predicted Functional Partners:
SAC7-2
Phosphoinositide phosphatase SAC7.
 
  
 
 0.609
PUB72
U-box domain-containing protein 72.
    
   0.547
MA16_Dca013991
PI-PLC X domain-containing protein.
      
 0.533
SAC8
Phosphoinositide phosphatase SAC8.
 
  
 
 0.437
ARF-3
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
     
 0.430
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.