STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HD3A-4Protein HEADING DATE 3A. (284 aa)    
Predicted Functional Partners:
MA16_Dca000802
Uncharacterized protein.
    
   0.926
HD3A-2
Protein HEADING DATE 3A.
  
  
 
0.901
MA16_Dca020378
Uncharacterized protein.
   
 
 0.759
MA16_Dca010610
Uncharacterized protein.
   
 
 0.729
rps5-2
30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.
   
   0.723
RPL13
50S ribosomal protein L13, chloroplastic; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.712
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.696
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
   0.685
RPL2
60S ribosomal protein L2, mitochondrial.
   
 
 0.684
rpl2-A
50S ribosomal protein L2, chloroplastic.
   
 
 0.684
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.