STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABC1-2Ras-related protein RABC1. (209 aa)    
Predicted Functional Partners:
MA16_Dca026028
Uncharacterized protein.
    
 0.755
MA16_Dca008869
RAB3GAP2_N domain-containing protein.
     
 0.747
MA16_Dca015410
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.646
MA16_Dca010629
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.646
RABH1B-2
Ras-related protein RABH1b.
  
 
0.607
RABH1E
Ras-related protein RABH1e.
  
 
0.607
MA16_Dca002044
Geranylgeranyl transferase type-2 subunit beta.
     
 0.560
FTB-3
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.560
MA16_Dca026864
Uncharacterized protein.
     
 0.522
MA16_Dca026863
Uncharacterized protein.
     
 0.522
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.