STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca023448Glucan endo-1,3-beta-glucosidase 14; Belongs to the glycosyl hydrolase 17 family. (428 aa)    
Predicted Functional Partners:
MA16_Dca014006
J domain-containing protein.
    
 0.696
ARP4
Actin-related protein 4; Belongs to the actin family.
    
 0.689
MA16_Dca007904
SWI/SNF complex component SNF12 like.
    
 0.684
MA16_Dca009966
Uncharacterized protein.
    
 0.626
HMGB9
High mobility group B protein 9.
   
 
 0.591
HMGB15
High mobility group B protein 15.
   
 
 0.591
DAW1
Dynein assembly factor with WDR repeat domains 1.
   
  0.421
SWI3C
SWI/SNF complex subunit SWI3C.
    
 0.413
SWI3A
SWI/SNF complex subunit SWI3A.
    
 0.413
SWI3B
SWI/SNF complex subunit SWI3B.
    
 0.413
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.