STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca022853Uncharacterized protein. (754 aa)    
Predicted Functional Partners:
MA16_Dca002869
Uncharacterized protein.
   
 0.730
MA16_Dca003634
Uncharacterized protein.
   
 0.717
MA16_Dca008750
Uncharacterized protein.
   
 0.643
MA16_Dca001002
Beta-Casp domain-containing protein.
    
 0.606
CPSF73-II-2
Cleavage and polyadenylation specificity factor subunit 3-II.
    
 0.605
MA16_Dca018068
RPOL4c domain-containing protein.
   
  0.542
MA16_Dca001991
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
    
 0.537
ALDH6B2
Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.
   
 0.535
ALDH6B2-2
Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.
   
 0.535
VATP-P1
V-type proton ATPase 16 kDa proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.
    
 0.526
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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