STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca013082Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (287 aa)    
Predicted Functional Partners:
MA16_Dca008600
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
 
 
   0.946
MA16_Dca018408
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.933
MA16_Dca010525
33 kDa ribonucleoprotein, chloroplastic.
   
   0.931
MA16_Dca024010
Zinc finger CCCH domain-containing protein 42.
   
   0.925
MA16_Dca003124
Brix domain-containing protein.
   
   0.905
MA16_Dca005167
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
   0.876
APUM24
Pumilio like 24.
   
 
 0.876
MA16_Dca005108
Uncharacterized protein.
   
  
 0.861
MA16_Dca002277
DEAD-box ATP-dependent RNA helicase 28; Belongs to the DEAD box helicase family.
   
 
 0.838
MA16_Dca019311
Uncharacterized protein.
   
 
 0.837
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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