STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca018674Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
RPB36A
DNA-directed RNA polymerase II subunit RPB3-A.
  
 0.992
RPB36A-2
DNA-directed RNA polymerase II subunit RPB3-A.
  
 0.992
RPB13.6
DNA-directed RNA polymerase II subunit RPB11.
   
 0.987
RPB13.6-2
DNA-directed RNA polymerase II subunit RPB11.
   
 0.987
MA16_Dca004462
Uncharacterized protein.
   
 0.983
MA16_Dca014065
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
  
 0.982
MA16_Dca016669
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
  
 0.982
MA16_Dca012566
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.981
RPB135
DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.
  
 0.980
MA16_Dca018068
RPOL4c domain-containing protein.
   
 0.978
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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