STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPHK1-2Sphingosine kinase 1. (542 aa)    
Predicted Functional Partners:
SPL
Sphingosine-1-phosphate lyase.
   
 0.958
MA16_Dca002203
Dihydroceramidase.
    
 0.940
MA16_Dca006534
Dihydroceramidase.
    
 0.940
TR1
Tropinone reductase 1.
     
 0.931
HSD2-2
11-beta-hydroxysteroid dehydrogenase-like 2.
     
 0.931
TR1-3
Tropinone reductase 1.
     
 0.931
MA16_Dca010277
Neutral ceramidase.
     
 0.928
MA16_Dca002839
Neutral ceramidase.
     
 0.928
SPHK1
Sphingosine kinase 1.
  
  
 
0.901
SPHK2
Sphingosine kinase 2.
  
  
 
0.901
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.