STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPS13-740S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)    
Predicted Functional Partners:
RPS25E
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.970
RPS29
40S ribosomal protein S29.
   
 0.970
RPS12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
  
 0.967
RPS21
40S ribosomal protein S21.
   
 0.962
rps16
30S ribosomal protein S16, chloroplastic.
  
 0.956
MA16_Dca025788
Uncharacterized protein.
   
 0.953
RPL5-3
60S ribosomal protein L5.
   
 
 0.940
RPL38A
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 
 0.933
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.932
rps6-2
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.932
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.