STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca019288Protein MAK16 homolog; Belongs to the MAK16 family. (234 aa)    
Predicted Functional Partners:
MA16_Dca020506
Putative ribosome biogenesis protein RLP24.
   
   0.997
MA16_Dca024010
Zinc finger CCCH domain-containing protein 42.
   
 
 0.997
MA16_Dca019813
Putative rRNA-processing protein EBP2 like.
   
 
 0.996
MA16_Dca004305
Uncharacterized protein.
   
 
 0.995
MA16_Dca024220
Uncharacterized protein.
   
 
 0.994
MA16_Dca005801
Brix domain-containing protein.
   
 
 0.993
MA16_Dca003124
Brix domain-containing protein.
   
   0.993
MA16_Dca010315
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.991
MA16_Dca017082
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.990
MA16_Dca003219
Uncharacterized protein.
   
   0.988
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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