STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca006170CX9C domain-containing protein. (81 aa)    
Predicted Functional Partners:
MA16_Dca015692
Uncharacterized protein.
    
   0.545
RPL6
60S ribosomal protein L6, mitochondrial; Belongs to the universal ribosomal protein uL6 family.
    
   0.545
RPS7
Ribosomal protein S7, mitochondrial.
    
   0.545
RPL19
50S ribosomal protein L19, chloroplastic.
    
   0.545
RPS19
Ribosomal protein S19, mitochondrial; Belongs to the universal ribosomal protein uS19 family.
    
   0.545
MA16_Dca024654
Uncharacterized protein.
    
   0.545
RPL16
60S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.
    
   0.545
RPS10
Ribosomal protein S10, mitochondrial.
    
   0.545
YMF40-2
Putative mitochondrial protein ymf40.
    
   0.545
MA16_Dca012140
Ribosomal_L30 domain-containing protein.
    
   0.545
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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