STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca009455Mitochondrial intermediate peptidase. (221 aa)    
Predicted Functional Partners:
FH
Frataxin, mitochondrial.
   
 
 0.541
SPT16-4
FACT complex subunit SPT16.
   
 
 0.533
PREP1
Presequence protease 1, chloroplastic/mitochondrial.
    
 
 0.504
ycf56
Uncharacterized protein ycf56.
  
  
 0.465
FTB
Protein farnesyltransferase subunit beta.
      
 0.449
MA16_Dca011809
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
  
 0.447
TIM10
Mitochondrial import inner membrane translocase subunit TIM10.
      
 0.442
MA16_Dca015604
Peptidase_M48 domain-containing protein.
  
  
 0.429
TOM40-1
Mitochondrial import receptor subunit TOM40-1.
      
 0.412
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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