STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PF20-4Flagellar WD repeat-containing protein Pf20. (192 aa)    
Predicted Functional Partners:
MA16_Dca008673
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.985
FY-2
Flowering time control protein FY.
  
0.982
MA16_Dca012228
B30.2/SPRY domain-containing protein.
   
 0.937
MA16_Dca008379
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.935
MA16_Dca011011
Zinc finger CCCH domain-containing protein 45.
   
 0.920
Mut11-8
Protein Mut11.
   
 0.909
MA16_Dca014126
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.906
MA16_Dca013599
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.906
MA16_Dca018286
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.906
PP1
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.906
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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