STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABH1-2Nuclear cap-binding protein subunit 1. (233 aa)    
Predicted Functional Partners:
CBP20
Nuclear cap-binding protein subunit 2.
   
 0.984
SE
Serrate RNA effector molecule.
   
 0.977
MA16_Dca009492
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.961
ABH1
Nuclear cap-binding protein subunit 1.
 
  
  0.957
MA16_Dca012579
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.952
MA16_Dca012910
Putative small nuclear ribonucleoprotein F.
   
  0.947
MA16_Dca017531
Small nuclear ribonucleoprotein-associated protein.
   
 0.947
MA16_Dca005274
Small nuclear ribonucleoprotein Sm D2.
    
 0.932
MA16_Dca023231
Small nuclear ribonucleoprotein G.
    
  0.887
MA16_Dca006477
Uncharacterized protein.
    
  0.887
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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