STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl950S ribosomal protein L9, chloroplastic. (207 aa)    
Predicted Functional Partners:
MA16_Dca025788
Uncharacterized protein.
  
 
 0.991
MA16_Dca022400
Uncharacterized protein.
  
 
 0.988
RPL5-3
60S ribosomal protein L5.
  
 
 0.988
rps16
30S ribosomal protein S16, chloroplastic.
   
 
 0.984
rpl20
50S ribosomal protein L20, chloroplastic.
  
 
 0.979
RPL19
50S ribosomal protein L19, chloroplastic.
   
 
 0.978
RPL17-4
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.977
RPL21M
50S ribosomal protein L21, mitochondrial.
  
 
 0.973
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.971
RPL24
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
  
 
 0.970
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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