STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPT1-2Putative homogentisate phytyltransferase 1, chloroplastic. (250 aa)    
Predicted Functional Partners:
CHLP-2
Geranylgeranyl diphosphate reductase, chloroplastic.
  
 
 0.717
CHLP
Geranylgeranyl diphosphate reductase, chloroplastic.
  
 
 0.716
ABC4
1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic.
    
 0.701
HPD
4-hydroxyphenylpyruvate dioxygenase.
     
 0.687
ISPG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic.
    
 0.679
IPI1
Isopentenyl-diphosphate Delta-isomerase I.
  
 
 0.673
IPI1-2
Isopentenyl-diphosphate Delta-isomerase I.
  
 
 0.673
VTE1
Putative tocopherol cyclase, chloroplastic.
 
   
 0.614
MA16_Dca025833
Uncharacterized protein.
 
  
 0.590
MA16_Dca014740
Uncharacterized protein.
    
 0.585
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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