STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDIL5-4-4Protein disulfide-isomerase 5-4. (297 aa)    
Predicted Functional Partners:
mnmE
Putative tRNA modification GTPase mnmE.
  
 0.755
MA16_Dca028050
KH_dom-like domain-containing protein.
  
 0.755
mnmE-2
Putative tRNA modification GTPase mnmE.
  
 0.755
mnmE-3
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.
  
 0.755
mnmE-4
Putative tRNA modification GTPase mnmE; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.755
MA16_Dca016336
tRNA-specific 2-thiouridylase.
  
 0.707
VAMP724
Vesicle-associated membrane protein 724; Belongs to the synaptobrevin family.
      
 0.400
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.