STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca010370Putative N6-adenosine-methyltransferase MT-A70-like; Belongs to the MT-A70-like family. (777 aa)    
Predicted Functional Partners:
MA16_Dca015907
Methyltransferase-like protein 1; Belongs to the MT-A70-like family.
  
 
0.997
MA16_Dca001541
VIR_N domain-containing protein.
    
 
 0.768
NRPD1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.696
CBP20
Nuclear cap-binding protein subunit 2.
   
 
 0.684
MA16_Dca027348
Uncharacterized protein.
  
    0.663
MA16_Dca026158
Uncharacterized protein.
  
    0.663
MA16_Dca017559
Uncharacterized protein.
  
    0.663
XPB1
DNA repair helicase XPB1.
  
    0.663
MA16_Dca004462
Uncharacterized protein.
   
 
  0.661
RPB36A-2
DNA-directed RNA polymerase II subunit RPB3-A.
   
 
 0.652
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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