STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca010412Ribonucleases P/MRP protein subunit RPP25. (273 aa)    
Predicted Functional Partners:
MA16_Dca002789
Ribonuclease P/MRP protein subunit RPP1.
    
 0.793
MA16_Dca003651
Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.
    
 0.753
MA16_Dca016795
Ribonuclease P/MRP protein subunit POP1.
    
 0.688
MA16_Dca023558
Ribosomal_L7Ae domain-containing protein.
   
 0.594
MA16_Dca000208
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.594
RPS9C
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
   
 
  0.456
RPS9C-3
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
   
 
  0.456
RPS9C-2
40S ribosomal protein S9-2.
   
 
  0.445
C
Cell wall / vacuolar inhibitor of fructosidase 2.
   
 
  0.442
MA16_Dca025432
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
  0.442
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.