RABE1A protein (Dendrobium catenatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RABE1A

Ras-related protein RABE1a. (224 aa)

Predicted Functional Partners:

VPS33

0.706

COG4

0.696

VPS36

0.687

MA16_Dca015410

0.670

MA16_Dca010629

0.670

SYP112

0.662

SYP112-2

0.662

MEMB11

0.655

SEC22

0.646

VTI13

0.645

Your Current Organism:

Dendrobium catenatum

NCBI taxonomy Id: 906689
Other names: D. catenatum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COG4	MEMB11	A0A2I0WRS1	A0A2I0W1W2	Conserved oligomeric Golgi complex subunit 4.	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.934
COG4	RABE1A	A0A2I0WRS1	A0A2I0X8S2	Conserved oligomeric Golgi complex subunit 4.	Ras-related protein RABE1a.	0.696
COG4	SEC22	A0A2I0WRS1	A0A2I0VT73	Conserved oligomeric Golgi complex subunit 4.	25.3 kDa vesicle transport protein; Belongs to the synaptobrevin family.	0.735
COG4	SYP112	A0A2I0WRS1	A0A2I0VYQ7	Conserved oligomeric Golgi complex subunit 4.	Syntaxin-112.	0.638
COG4	SYP112-2	A0A2I0WRS1	A0A2I0WAB6	Conserved oligomeric Golgi complex subunit 4.	Syntaxin-112.	0.638
COG4	VPS33	A0A2I0WRS1	A0A2I0VPF8	Conserved oligomeric Golgi complex subunit 4.	Vacuolar protein sorting-associated protein 33 like; Belongs to the STXBP/unc-18/SEC1 family.	0.690
COG4	VPS36	A0A2I0WRS1	A0A2I0X2Z8	Conserved oligomeric Golgi complex subunit 4.	Vacuolar protein sorting-associated protein 36.	0.680
COG4	VTI13	A0A2I0WRS1	A0A2I0VGI9	Conserved oligomeric Golgi complex subunit 4.	Vesicle transport v-SNARE 13.	0.919
MA16_Dca010629	RABE1A	A0A2I0VZP6	A0A2I0X8S2	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Ras-related protein RABE1a.	0.670
MA16_Dca015410	RABE1A	A0A2I0VBV5	A0A2I0X8S2	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Ras-related protein RABE1a.	0.670
MEMB11	COG4	A0A2I0W1W2	A0A2I0WRS1	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Conserved oligomeric Golgi complex subunit 4.	0.934
MEMB11	RABE1A	A0A2I0W1W2	A0A2I0X8S2	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Ras-related protein RABE1a.	0.655
MEMB11	SEC22	A0A2I0W1W2	A0A2I0VT73	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	25.3 kDa vesicle transport protein; Belongs to the synaptobrevin family.	0.996
MEMB11	SYP112	A0A2I0W1W2	A0A2I0VYQ7	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Syntaxin-112.	0.795
MEMB11	SYP112-2	A0A2I0W1W2	A0A2I0WAB6	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Syntaxin-112.	0.795
MEMB11	VPS33	A0A2I0W1W2	A0A2I0VPF8	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Vacuolar protein sorting-associated protein 33 like; Belongs to the STXBP/unc-18/SEC1 family.	0.637
MEMB11	VPS36	A0A2I0W1W2	A0A2I0X2Z8	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Vacuolar protein sorting-associated protein 36.	0.637
MEMB11	VTI13	A0A2I0W1W2	A0A2I0VGI9	Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Vesicle transport v-SNARE 13.	0.817
RABE1A	COG4	A0A2I0X8S2	A0A2I0WRS1	Ras-related protein RABE1a.	Conserved oligomeric Golgi complex subunit 4.	0.696
RABE1A	MA16_Dca010629	A0A2I0X8S2	A0A2I0VZP6	Ras-related protein RABE1a.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.670