STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PERK1-4Proline-rich receptor-like protein kinase PERK1. (293 aa)    
Predicted Functional Partners:
SPHK1
Sphingosine kinase 1.
     
 0.656
SPHK1-2
Sphingosine kinase 1.
     
 0.656
SPHK1-3
Sphingosine kinase 1.
     
 0.656
CC-1
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
      
 0.635
CC-1-2
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
      
 0.635
PARP1
Poly [ADP-ribose] polymerase.
      
 0.632
AFR
F-box protein AFR.
      
 0.630
CDKB2-1
Cyclin-dependent kinase B2-1; Belongs to the protein kinase superfamily.
  
 
 0.531
COL1
Zinc finger protein CONSTANS-LIKE 1.
    
 
 0.528
CDKB1-1
Cyclin-dependent kinase B1-1; Belongs to the protein kinase superfamily.
  
 
 0.523
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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