STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYP18-4Peptidyl-prolyl cis-trans isomerase CYP18-4. (514 aa)    
Predicted Functional Partners:
MA16_Dca000802
Uncharacterized protein.
    
  0.970
PUB72
U-box domain-containing protein 72.
    
 0.738
MA16_Dca004343
Uncharacterized protein.
    
 0.737
MBB1
PsbB mRNA maturation factor Mbb1, chloroplastic.
    
 0.734
MA16_Dca022268
Uncharacterized protein.
   
 0.734
MA16_Dca013773
SKIP_SNW domain-containing protein.
    
 0.731
MA16_Dca015398
Sugar transporter ERD6-like 7; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 0.728
MA16_Dca014255
ABC transporter domain-containing protein.
   
 0.711
MBB1-3
PsbB mRNA maturation factor Mbb1, chloroplastic.
   
 0.702
MA16_Dca019320
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.685
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.