STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca023796Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1020 aa)    
Predicted Functional Partners:
LCA1-2
Calcium-transporting ATPase, endoplasmic reticulum-type.
  
 
 0.667
LCA1-3
Calcium-transporting ATPase, endoplasmic reticulum-type.
  
 
0.471
ARP
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
     
 0.453
VTE5
Phytol kinase 1, chloroplastic.
      
 0.437
MA16_Dca003936
Peptide methionine sulfoxide reductase.
     
 0.437
TOC34
Translocase of chloroplast; GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis.
    
 
 0.432
CPN10
10 kDa chaperonin; Belongs to the GroES chaperonin family.
      
 0.422
CPN10-2
10 kDa chaperonin; Belongs to the GroES chaperonin family.
      
 0.422
LCA1
Calcium-transporting ATPase, endoplasmic reticulum-type; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
  
 
0.417
ECA1
Calcium-transporting ATPase 1, endoplasmic reticulum-type; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family.
  
 
0.417
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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