STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYP38Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic. (449 aa)    
Predicted Functional Partners:
PSBO
Oxygen-evolving enhancer protein 1, chloroplastic.
  
  
 0.627
PPL1
PsbP-like protein 1, chloroplastic.
  
  
 0.601
FKBP20-2
Peptidylprolyl isomerase.
   
 0.539
MA16_Dca005194
Thylakoid lumenal protein.
  
  
 0.534
THF1
Protein THYLAKOID FORMATION1, chloroplastic.
  
  
 0.532
MA16_Dca018228
VKc domain-containing protein.
  
   
 0.520
THF1-2
Protein THYLAKOID FORMATION1, chloroplastic.
  
  
 0.510
HCF136-2
Photosystem II stability/assembly factor HCF136, chloroplastic.
  
  
 0.491
P5CS
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
     
 0.489
HCF136
Photosystem II stability/assembly factor HCF136, chloroplastic.
  
  
 0.478
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.