STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA16_Dca014553Vacuolar-processing enzyme alpha-isozyme. (393 aa)    
Predicted Functional Partners:
MA16_Dca024025
Uncharacterized protein.
   
 0.999
MA16_Dca006630
Uncharacterized protein.
    
 0.999
MA16_Dca015830
Uncharacterized protein.
   
 0.995
MA16_Dca017342
Uncharacterized protein.
    
 0.958
MA16_Dca009987
Uncharacterized protein.
    
 0.955
MA16_Dca016064
Phosphatidylinositol glycan, class N.
    
 
 0.603
VALRS-5
Valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.587
ALG12
Mannosyltransferase.
      
 0.569
MA16_Dca002565
N-acetylglucosaminylphosphatidylinositol deacetylase.
      
 0.569
PIGM
GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.
      
 0.569
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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