STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPL17-450S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family. (161 aa)    
Predicted Functional Partners:
RPL5-3
60S ribosomal protein L5.
  
 
 0.991
rps16
30S ribosomal protein S16, chloroplastic.
  
 
 0.991
MA16_Dca025788
Uncharacterized protein.
  
 
 0.991
rpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.991
MA16_Dca022400
Uncharacterized protein.
   
 
 0.983
rpl9
50S ribosomal protein L9, chloroplastic.
  
 
 0.977
RPL19
50S ribosomal protein L19, chloroplastic.
  
 
 0.976
rpl20
50S ribosomal protein L20, chloroplastic.
  
 
 0.976
RPL24
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
  
 
 0.976
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.975
Your Current Organism:
Dendrobium catenatum
NCBI taxonomy Id: 906689
Other names: D. catenatum
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