STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK91916.1HD domain protein. (218 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.788
GAK91915.1
Hypothetical protein.
       0.746
GAK91914.1
Hypothetical protein.
       0.598
GAK94310.1
Flagellar motor rotation protein MotB.
    
   0.420
GAK93656.1
Flagellar motor rotation protein MotB.
    
   0.420
GAK94932.1
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
   
 
 0.408
Your Current Organism:
Nonlabens ulvanivorans
NCBI taxonomy Id: 906888
Other names: CIP 110082, DSM 22727, Flavobacteriaceae bacterium JCM 19296, Flavobacteriaceae bacterium JCM 19297, Flavobacteriaceae bacterium JCM 19298, Flavobacteriaceae bacterium JCM 19314, N. ulvanivorans, Nonlabens ulvanivorans (Barbeyron et al. 2011) Yi and Chun 2012, Persicivirga sp. PLR, Persicivirga ulvanivorans, Persicivirga ulvanivorans Barbeyron et al. 2011, strain PLR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.