STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31777.1HTH domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF08279. (88 aa)    
Predicted Functional Partners:
manX
PTS system, mannose/fructose/sorbose family, IIB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824.
  
 
 0.905
EFR31597.1
Hexose kinase, 1-phosphofructokinase family; Identified by match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
 
 0.817
srlA
PTS system, glucitol/sorbitol-specific, IIC component; Identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821.
  
    0.810
EFR31645.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.806
EFR31818.1
Glucitol operon activator protein (GutM); Identified by match to protein family HMM PF06923.
  
    0.797
EFR31677.1
PRD domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00874; match to protein family HMM PF08279.
       0.773
srlE
PTS system, glucitol/sorbitol-specific, IIBC component; Identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825.
  
    0.763
treP
PTS system trehalose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992.
   
 
 0.722
EFR31788.1
PTS system glucitol/sorbitol-specific IIA component; Identified by match to protein family HMM PF03829.
  
    0.710
ptsH
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 
 0.598
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.