STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatCPTS system, galactitol-specific IIC component; Identified by match to protein family HMM PF03611. (422 aa)    
Predicted Functional Partners:
EFR31737.1
PTS system, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302.
 
 
 0.999
EFR31769.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
 0.997
EFR31734.1
Putative chlorophyll synthesis pathway protein BchC; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
 
  0.945
ptsH
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
 0.937
EFR31733.1
Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
 
  0.920
EFR31595.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
  
 
  0.883
EFR31597.1
Hexose kinase, 1-phosphofructokinase family; Identified by match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.834
EFR31645.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.750
EFR30704.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
  
 
  0.750
EFR32107.1
Amidase; Identified by match to protein family HMM PF01425.
   
    0.664
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.