STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31638.1ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (568 aa)    
Predicted Functional Partners:
EFR31721.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.982
EFR31791.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.974
EFR31632.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
  
 0.905
EFR30477.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.881
EFR31983.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.881
EFR31627.1
Identified by match to protein family HMM PF00149.
 
     0.864
EFR31648.1
PHP domain protein; Identified by match to protein family HMM PF02811.
 
     0.853
EFR30472.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.809
EFR31544.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.809
EFR31937.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.809
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.