STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31669.1Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM TIGR01813. (651 aa)    
Predicted Functional Partners:
EFR30468.1
Flavin reductase; Identified by match to protein family HMM PF03358.
  
  0.977
EFR30467.1
Flavin reductase; Identified by match to protein family HMM PF03358.
  
  0.952
EFR30506.1
Acetyl-CoA hydrolase/transferase; Identified by match to protein family HMM PF02550.
   
 
 0.868
gcdC
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Identified by match to protein family HMM PF00364.
   
 
 0.865
EFR30473.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.849
aldB
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.849
EFR30959.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM PF07992; match to protein family HMM TIGR01813.
 
  
 
0.816
EFR31238.1
Hypothetical protein; Identified by glimmer; putative.
    
  0.814
EFR31310.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.
    
  0.814
EFR30548.1
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155; match to protein family HMM PF00266.
   
 
 0.804
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.