STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31650.1Identified by match to protein family HMM PF02525. (233 aa)    
Predicted Functional Partners:
EFR31688.1
Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
    
  0.839
EFR31631.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.778
phoP_1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.778
EFR31730.1
Hypothetical protein.
       0.773
EFR32060.1
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
 
 0.670
EFR31311.1
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
 
 0.670
EFR30820.1
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
 
  0.626
EFR30548.1
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155; match to protein family HMM PF00266.
   
    0.506
EFR30628.1
Putative aromatic-amino-acid transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM PF00266.
   
    0.506
EFR31602.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040.
    
  0.472
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.