STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31666.1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (269 aa)    
Predicted Functional Partners:
EFR31738.1
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
    0.976
EFR31674.1
ABC transporter substrate binding protein; Identified by match to protein family HMM PF04392.
 
    0.923
EFR31710.1
ABC transporter substrate binding protein; Identified by match to protein family HMM PF04392.
 
    0.917
EFR31052.1
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
    0.900
EFR31266.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
      0.874
EFR31140.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.831
EFR31246.1
ABC transporter substrate binding protein; Identified by match to protein family HMM PF04392.
 
    0.799
EFR30957.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.776
EFR31801.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
EFR31719.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
0.679
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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