STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31828.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
gnd
Phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
 
  
 0.978
zwf
Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
  
 0.961
pdxB
4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.672
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
     
 0.613
EFR31827.1
Hypothetical protein.
       0.610
EFR31848.1
Hypothetical protein.
       0.610
EFR30738.1
Methyltransferase domain protein; Identified by match to protein family HMM PF01135; match to protein family HMM PF01596; match to protein family HMM PF08241.
    
  0.610
ccpA
Identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481.
  
 
   0.587
malR
HTH-type transcriptional regulator MalR; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
 
   0.534
EFR31250.1
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
  0.456
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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