STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR31476.1Identified by match to protein family HMM PF06265. (238 aa)    
Predicted Functional Partners:
EFR31516.1
HAD hydrolase, TIGR01457 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460.
 
  
 0.877
EFR31502.1
Identified by match to protein family HMM PF00149; Belongs to the 5'-nucleotidase family.
  
    0.802
EFR31520.1
Identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906.
  
    0.783
EFR31469.1
Hypothetical protein.
  
   
 0.723
EFR30987.1
Replication initiation and membrane attachment protein, DnaB/DnaD family; Identified by match to protein family HMM PF07261.
  
    0.710
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.672
EFR30943.1
Primosomal protein DnaI; Identified by match to protein family HMM PF07319.
  
     0.601
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.586
yqeH
Ribosome biogenesis GTPase YqeH; Identified by match to protein family HMM TIGR03597.
  
     0.586
EFR31003.1
Identified by match to protein family HMM PF06949; Belongs to the UPF0473 family.
  
     0.572
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.