STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comGAComG operon protein 1; Identified by match to protein family HMM PF00437. (337 aa)    
Predicted Functional Partners:
EFR31512.1
Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.
 
 
 0.998
EFR31530.1
Hypothetical protein; Identified by glimmer; putative.
  
 0.986
EFR31483.1
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.969
EFR31510.1
Prepilin-type cleavage/methylation N-terminal domain protein; Overlaps another CDS with the same product name.
  
  
 0.918
EFR31450.1
Bacterial peptidase A24, N-terminal domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
 
 
 0.905
comFA
ComF operon protein 1; Identified by match to protein family HMM PF00271.
   
  
 0.856
EFR31478.1
Putative DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
  
 0.791
EFR31519.1
comEA protein; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.
 
  
 0.783
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
  
 0.595
EFR31493.1
Hypothetical protein; Identified by glimmer; putative.
       0.584
Your Current Organism:
Eremococcus coleocola
NCBI taxonomy Id: 908337
Other names: E. coleocola ACS-139-V-Col8, Eremococcus coleocola ACS-139-V-Col8, Eremococcus coleocola str. ACS-139-V-Col8, Eremococcus coleocola strain ACS-139-V-Col8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.